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Home/Compounds/CAS 3690-10-6
Formula C9H12N2O5MW 228.2Research-use catalog entryCOA/SDS by request

Zebularine

CAS Number: 3690-10-6

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Loading RDKit molecule structure...
InChIKey: RPQZTTQVRYEKCR-WCTZXXKLSA-NC9H12N2O5 | MW 228.2

Chemical Absolute Identifiers

CAS Number

3690-10-6

PubChem CID

100016

Molecular Formula

C9H12N2O5

Molecular Weight

228.2 g/mol

Exact Mass

228.074621

InChIKey

RPQZTTQVRYEKCR-WCTZXXKLSA-N

IUPAC Name

1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

SMILES String

C1=CN(C(=O)N=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O

Physical Properties

No physical property values available.

Properties are provided as catalog reference data and may be confirmed through supplier documentation when required.

Catalog Facts

Structural features

Zebularine (CAS 3690-10-6) is listed in the Life Science portfolio, with molecular formula C9H12N2O5 and molecular weight 228. 20 g/mol.

Sourcing context

Catalog reference for RFQ preparation, supplier confirmation, and research chemical sourcing review.

Research use context

Intended for life-science research and analytical workflows; structure-derived tags include nitrogen-containing heterocycle.

Documentation needs

COA/SDS status, availability, lead time, pack size, and shipment documentation can be confirmed during quotation.

Applications & Classification

Life Science ResearchNucleic Acid ResearchResearch intermediateCustom synthesis building blockResearch chemical sourcingCustom synthesis and catalog availability reviewCOA, SDS, pricing, and fulfillment workflow
Biological target reference

ChEMBL reports experimental activity evidence for: Cytidine deaminase (Homo sapiens) — 3 assays; Protein deacetylase HDAC6 (Homo sapiens) — 2 assays. These records describe research assays and do not establish therapeutic efficacy or clinical use.

Cytidine deaminase

Homo sapiens · SINGLE PROTEIN · 3 qualifying assays · 2 documents · best pChEMBL 5.7

Experimental evidence source: ChEMBL

Protein deacetylase HDAC6

Homo sapiens · SINGLE PROTEIN · 2 qualifying assays · 1 documents

Experimental evidence source: ChEMBL

Safety & Handling

Handling & Storage

  • Keep container tightly closed and dry.
  • Store in a well-ventilated place.

PPE

Respiratory protection if needed

First Aid

  • Do not give anything to an unconscious person.
  • Rinse mouth with water.

Stability / Reactivity

  • Reactivity.
  • Carbon monoxide, carbon dioxide, nitrogen oxides.

Disposal

  • The product.
  • Dispose of remaining and non-recyclable solutions to a licensed company.
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Fire Fighting

  • If necessary, wear a self-contained breathing apparatus for firefighting.

Accidental Release

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  • Use personal protective equipment and emergency procedures.

For supplier-issued SDS, request documentation before handling, storage, shipment, or procurement decisions.

Preliminary Safety Reference

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Safety Reference / SDS Request

Names & Synonyms / External Identifiers

Chemical Name

Zebularine

Names & Synonyms

4-DeoxyuridinePyrimidin-2-one ribonucleosidePyrimidin-2-one beta-ribofuranosidePyrimidin-2-one beta-D-ribofuranoside1-beta-D-ribofuranosylpyrimidin-2(1H)-one
Show all synonyms
2(1H)-Pyrimidinone, 1-beta-D-ribofuranosyl-1-beta-D-ribofuranosyl-2(1H)-pyrimidinone1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl)-1,2-dihydropyrimidin-2-one2-Pyrimidone-1-beta-D-riboside1-((2R,3R,4S,5R)-3,4-Dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidin-2(1H)-one4-Deoyuridine2(1H)-Pyrimidinone, 1-.beta.-D-ribofuranosyl-4pd71-(beta-D-ribofuranosyl)pyrimidin-2(1H)-oneURIDINE, 4-DEOXY-1-Pentofuranosylpyrimidin-2(1H)-oneZebularine, >=98% (HPLC), solid
External Identifiers
DSSTOX SUBSTANCE ID: DTXSID20958099CHEMBL ID: CHEMBL504567CHEBI ID: CHEBI:46938UNII: 7A9Y5SX0GYDRUGBANK ID: DB03068METABOLOMICS WORKBENCH ID: 56736NCI THESAURUS CODE: C37455WIKIDATA ID: Q8068322pyrimidin-2-one-ribonucleoside
Experimental Spectrum References
13C NMR Spectra
Literature & Patent References
DOI 10.1021/acs.jmedchem.5c00056Substrate Specificity of the Organic Cation Transporters MATE1 and MATE2K and Functional Overlap with OCT1 and OCT2.PMID 40512599Substrate Specificity of the Organic Cation Transporters MATE1 and MATE2K and Functional Overlap with OCT1 and OCT2.DOI 10.1021/acs.jmedchem.1c00601Emerging Therapeutic Potential of SIRT6 Modulators.DOI 10.1186/s13148-021-01037-1Synergistic effects of type I PRMT and PARP inhibitors against non-small cell lung cancer cells.DOI 10.6019/CHEMBL4808148HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activatorsPMID 33691794Synergistic effects of type I PRMT and PARP inhibitors against non-small cell lung cancer cells.PMID 34213345Emerging Therapeutic Potential of SIRT6 Modulators.DOI 10.21203/rs.3.rs-23951/v1Identification of inhibitors of SARS-CoV-2 in-vitro cellular toxicity in human (Caco-2) cells using a large scale drug repurposing collection

Documentation & Compliance Facts

Compliance Facts

Shipment review: Required

Documentation available by request

Certificate of Analysis (COA): By request

Supplier Safety Data Sheet (SDS): By request

Purity and pack size confirmation: By request

Availability and lead time review: Confirmed by RFQ

Shipment documentation review: By request

For supplier-issued documentation by request, use the RFQ actions on this page.Review preliminary safety reference

What happens after RFQ

  1. 1We review the CAS identity, quantity, and documentation request.
  2. 2We check sourcing options, supplier availability, COA/SDS, purity, pack size, and lead time.
  3. 3We review destination and shipment documentation needs when applicable.
  4. 4We follow up with a quotation or clarification request.

Text Reference Cues

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Non-public related references

Cytarabine HydrochlorideCAS 69-74-9
N4-AcetylcytidineCAS 3768-18-1
N-BenzoylcytidineCAS 13089-48-0
5-HydroxymethylcytidineCAS 19235-17-7
9-beta-D-Arabinofuranosyl-1,9-dihydro-6H-purin-6-oneCAS 7013-16-3

Non-public references are shown as text only and do not imply equivalence, availability, or shared use.

Catalog navigation

Related Catalog Entries

Other public CAS pages in this catalog. These links support navigation across additional intermediates and do not imply equivalence, availability, or shared use.

CAS 69-74-9Cytarabine HydrochlorideCAS 3768-18-1N4-AcetylcytidineCAS 13089-48-0N-BenzoylcytidineCAS 19235-17-75-HydroxymethylcytidineCAS 7013-16-39-beta-D-Arabinofuranosyl-1,9-dihydro-6H-purin-6-oneCAS 50-69-1Aldehydo-D-riboseCAS 95058-81-4GemcitabineCAS 100-88-9CyclamateCAS 1000787-75-6TegobuvirCAS 1002310-00-0Tert-butyl 1-(2-chloro-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethylcarbamate

RFQ questions for CAS 3690-10-6

What are the key identifiers for Zebularine (CAS 3690-10-6)?

Zebularine is identified by CAS 3690-10-6, with molecular formula C9H12N2O5, molecular weight 228.2, InChIKey RPQZTTQVRYEKCR-WCTZXXKLSA-N.

Does CAS 3690-10-6 have reported biological target evidence?

ChEMBL contains qualifying experimental assay evidence associated with Cytidine deaminase, Protein deacetylase HDAC6. These records do not establish therapeutic efficacy or clinical use.

Can I request a COA for CAS 3690-10-6?

Yes. Submit an RFQ and specify COA requirements. Lot-specific COA depends on supplier confirmation.

Can I request supplier SDS for Zebularine?

Yes. Supplier SDS can be requested through the RFQ workflow before handling, storage, shipment, or procurement decisions.

Is CAS 3690-10-6 available for quotation?

Availability, pack size, lead time, and pricing are confirmed through RFQ.

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